Research Projects Directory

Research Projects Directory

153 active projects

This information was updated 7/27/2024

The Research Projects Directory includes information about all projects that currently exist in the Researcher Workbench to help provide transparency about how the Workbench is being used. Each project specifies whether Registered Tier or Controlled Tier data are used.

Note: Researcher Workbench users provide information about their research projects independently. Views expressed in the Research Projects Directory belong to the relevant users and do not necessarily represent those of the All of Us Research Program. Information in the Research Projects Directory is also cross-posted on AllofUs.nih.gov in compliance with the 21st Century Cures Act.

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Data_Wrangling_Demo1

Creating Educational video around data wrangling using Python.

Scientific Questions Being Studied

Creating Educational video around data wrangling using Python.

Project Purpose(s)

  • Educational

Scientific Approaches

Example will recapitulate current Demonstration Project while using the synthetic database.

Anticipated Findings

N/A

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Steve Scherer - Teacher/Instructor/Professor, Vanderbilt University Medical Center
Request a Review of this Research Project

Lyons_Sample Instructional Workspace

There are no scientific questions to be addressed in this workspace. The purpose of this workspace is to create a video demonstrating how to duplicate a workspace for educational purposes.

Scientific Questions Being Studied

There are no scientific questions to be addressed in this workspace. The purpose of this workspace is to create a video demonstrating how to duplicate a workspace for educational purposes.

Project Purpose(s)

  • Educational

Scientific Approaches

This workspace will not be used to engage with the dataset and conduct research, but rather as a tool for the generation of educational videos explaining how to conduct various introductory tasks on the Researcher Workbench.

Anticipated Findings

There are no anticipated findings. This workspace will be used to generate videos for training rather than scientific knowledge.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Michael Lyons - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Sample Instructional Workspace

There are no scientific questions to be addressed in this workspace. The purpose of this workspace is to create a video demonstrating how to duplicate a workspace for educational purposes.

Scientific Questions Being Studied

There are no scientific questions to be addressed in this workspace. The purpose of this workspace is to create a video demonstrating how to duplicate a workspace for educational purposes.

Project Purpose(s)

  • Educational

Scientific Approaches

This workspace will not be used to engage with the dataset and conduct research, but rather as a tool for the generation of educational videos explaining how to conduct various introductory tasks on the Researcher Workbench.

Anticipated Findings

There are no anticipated findings. This workspace will be used to generate videos for training rather than scientific knowledge.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Michael Lyons - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

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Scientific Questions Being Studied

test

Project Purpose(s)

  • Other Purpose (Test)

Scientific Approaches

test

Anticipated Findings

test

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

Workspace Name 1

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Scientific Questions Being Studied

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Project Purpose(s)

  • Educational

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

Intro to the Researcher Workbench Demo

There are no major scientific questions being addressed in this workspace. This workspace will be used as a demonstration workspace for outreach presentations and demonstrations.

Scientific Questions Being Studied

There are no major scientific questions being addressed in this workspace. This workspace will be used as a demonstration workspace for outreach presentations and demonstrations.

Project Purpose(s)

  • Educational

Scientific Approaches

This workspace will be used to demonstrate how to pull data into a notebook and how to use the Researcher Workbench.

Anticipated Findings

This workspace will be used for demonstration purposes only. No research findings will be published.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Michael Lyons - Project Personnel, Vanderbilt University Medical Center

Collaborators:

  • Samantha Stewart Bell - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Duplicate of V7 Demo for Hypertension Prevalence

This workspace is meant to create a tutorial on the Dataset Builder Tool based on selecting cohorts and concept sets to study hypertension prevalence.

Scientific Questions Being Studied

This workspace is meant to create a tutorial on the Dataset Builder Tool based on selecting cohorts and concept sets to study hypertension prevalence.

Project Purpose(s)

  • Educational

Scientific Approaches

We will be creating a dataset for a cohort for hypertension and for concept sets for demographics, education, income, and state.

Anticipated Findings

The findings from this workspace will be a demonstration for others on how you create a dataset using the dataset builder tool by creating an example dataset for hypertension prevalence.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

  • Julie Coleman - Project Personnel, Vanderbilt University Medical Center

Collaborators:

  • Shamika Ketkar - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Exploring the All of Us data for hypertension and other phenotypes

Not applicable – this workspace is intended for educational purposes for the 2024 BR Faculty Summit and after. We are practicing how to use the Researcher Workbench by analyzing data for hypertension and other phenotypes.

Scientific Questions Being Studied

Not applicable – this workspace is intended for educational purposes for the 2024 BR Faculty Summit and after. We are practicing how to use the Researcher Workbench by analyzing data for hypertension and other phenotypes.

Project Purpose(s)

  • Educational

Scientific Approaches

Not applicable – this workspace is intended for educational purposes for the 2024 BR Faculty Summit and after. We are practicing how to use the Researcher Workbench by analyzing data for hypertension and other phenotypes.

Anticipated Findings

Not applicable – this workspace is intended for educational purposes for the 2024 BR Faculty Summit and after. We are practicing how to use the Researcher Workbench by analyzing data for hypertension and other phenotypes.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Julie Coleman - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Webinars_and_Teaching

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Scientific Questions Being Studied

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Project Purpose(s)

  • Educational

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

  • Aymone Kouame - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

CT Stable

dev

Scientific Questions Being Studied

dev

Project Purpose(s)

  • Other Purpose (dev)

Scientific Approaches

d

Anticipated Findings

d

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Will Dolbeer - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Mar 13 demo - running

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Scientific Questions Being Studied

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Project Purpose(s)

  • Educational

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

Request a Review of this Research Project

DELETEME RStudio broken

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Scientific Questions Being Studied

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Project Purpose(s)

  • Educational

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

Request a Review of this Research Project

Mar 13 RT

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Scientific Questions Being Studied

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Project Purpose(s)

  • Educational

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

<h1>test</h1>

test

Scientific Questions Being Studied

test

Project Purpose(s)

  • Other Purpose (Test)

Scientific Approaches

test

Anticipated Findings

test

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

<h1>test</h1>

test

Scientific Questions Being Studied

test

Project Purpose(s)

  • Other Purpose (Test)

Scientific Approaches

test

Anticipated Findings

test

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

testname

Scientific Questions Being Studied

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Project Purpose(s)

  • Educational
  • Other Purpose (<script>alert(994)</script><script>alert(999)</script><script>alert(999)</script>)

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

ORAU Researcher Workbench Workshop/Demo

The purpose of this workspace is to provide an overview of the Researcher Workbench functionality (Cohort Builder and Dataset Builder) for education and training purposes.

Scientific Questions Being Studied

The purpose of this workspace is to provide an overview of the Researcher Workbench functionality (Cohort Builder and Dataset Builder) for education and training purposes.

Project Purpose(s)

  • Educational

Scientific Approaches

The Research Support team will demonstrate how to find concepts on the Researcher Workbench using a use case of sickle cell trait to create a case and control cohort. The goal of this project is to highlight the capabilities of the Cohort Builder, Cohort Review, and Dataset Builder, as well as explore All of Us data structure.

Anticipated Findings

There are no anticipated findings from this study; this project is used for education and training purposes only. After the workshop, we hope the attendees will have a basic understanding of how to create a cohort and dataset within the Researcher Workbench. Dissemination of this workspace and related cohorts, datasets, and notebooks will be for DRC operational use only.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

Researcher Workbench Demo

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied.

Scientific Questions Being Studied

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied.

Project Purpose(s)

  • Other Purpose (This is an operational use workspace intended for education, training, and DRC Outreach initiatives. )

Scientific Approaches

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied. This workspace will demonstration the use of the the Cohort Builder, Concept Set Selector, Dataset Builder, and notebooks.

Anticipated Findings

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied, and there are no anticipated findings.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

Request a Review of this Research Project

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Scientific Questions Being Studied

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Project Purpose(s)

  • Disease Focused Research (testspace</script>)
  • Population Health
  • Social / Behavioral
  • Educational
  • Drug Development
  • Methods Development
  • Control Set
  • Ancestry
  • Commercial
  • Ethical, Legal, and Social Implications (ELSI)
  • Other Purpose (testspace</script>testspace</script>testspace</script>)

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

  • Race / Ethnicity
  • Age
  • Sex at Birth
  • Gender Identity
  • Sexual Orientation
  • Geography
  • Disability Status
  • Access to Care
  • Education Level
  • Income Level

Data Set Used

Registered Tier

Research Team

Owner:

Request a Review of this Research Project

Demo_Projects

This is a test workspace which is used for for Outreach presentations, to demonstrate how to create a cohort and dataset. Different cohorts and datasets will be created as examples of how to (1) perform analysis of phenotype data (disease…

Scientific Questions Being Studied

This is a test workspace which is used for for Outreach presentations, to demonstrate how to create a cohort and dataset. Different cohorts and datasets will be created as examples of how to (1) perform analysis of phenotype data (disease state, lab measurements etc) and (2) perform GWAS analysis to identify genetic variants which are associated with specific disease states.

Project Purpose(s)

  • Educational

Scientific Approaches

To demonstrate how to perform analysis of phenotype data, I will use the cohort builder and dataset builder to build case and control cohorts with the concept sets of interest (disease state, lab measurements, basic demographics) To demonstrate how to perform a GWAS analysis, I will build cohorts of participants with srWGS data available with concept sets of interest (disease state, basic demographic data) using the cohort and dataset builders. These datasets will be exported to Jupyter Notebook to perform GWAS analysis and display the results as a Manhattan plot.

Anticipated Findings

Not applicable, as this is a test workspace to familiarize myself with performing different types of analysis on the workbench.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Megan He - Project Personnel, All of Us Program Operational Use
Request a Review of this Research Project

Researcher Workbench Demo

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied.

Scientific Questions Being Studied

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied.

Project Purpose(s)

  • Other Purpose (This is an operational use workspace intended for education, training, and DRC Outreach initiatives. )

Scientific Approaches

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied. This workspace will demonstration the use of the the Cohort Builder, Concept Set Selector, Dataset Builder, and notebooks.

Anticipated Findings

This is an operational use workspace intended for education, training, and DRC Outreach initiatives. This workspace will utilized the broad field of hypertension to demonstration the functionality of the Researcher Workbench. No specific scientific question will be studied, and there are no anticipated findings.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

Request a Review of this Research Project

temporal_feature

present the temporal feature in cohort builder during office hours to reasearchers

Scientific Questions Being Studied

present the temporal feature in cohort builder during office hours to reasearchers

Project Purpose(s)

  • Educational

Scientific Approaches

present the temporal feature in cohort builder during office hours to reasearchers. We are using mostly cohort builder.

Anticipated Findings

not applicable

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

Collaborators:

  • Samantha Stewart Bell - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Office Hour - Intro to Fitbit Data

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Scientific Questions Being Studied

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Project Purpose(s)

  • Educational

Scientific Approaches

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Anticipated Findings

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Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Registered Tier

Research Team

Owner:

  • Aymone Kouame - Project Personnel, Vanderbilt University Medical Center

Collaborators:

  • Samantha Stewart Bell - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Research Scholars Program

Demonstration

Scientific Questions Being Studied

Demonstration

Project Purpose(s)

  • Educational

Scientific Approaches

Demonstration

Anticipated Findings

Demonstration

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

  • Thomas Rion - Project Personnel, Vanderbilt University Medical Center
Request a Review of this Research Project

Measurement Invariance

The proposed analyses aim to describe the correlation and covariance of available measures across different subgroups to gain a better understanding of how these measures are related.

Scientific Questions Being Studied

The proposed analyses aim to describe the correlation and covariance of available measures across different subgroups to gain a better understanding of how these measures are related.

Project Purpose(s)

  • Educational

Scientific Approaches

Survey data and aggregated results from exploratory and confirmatory factor analyses will be used to assess psychometric characteristics of measures across different socio-demographic variables.

Anticipated Findings

Findings of proposed analyses can help advancing our understanding of measurement invariance across different subgroups and inform testing assumptions of
synthetic datasets.

Demographic Categories of Interest

This study will not center on underrepresented populations.

Data Set Used

Controlled Tier

Research Team

Owner:

Request a Review of this Research Project
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